tiledbsoma.ExperimentAxisQuery.to_anndata

ExperimentAxisQuery.to_anndata(X_name: str, *, column_names: AxisColumnNames | None = None, X_layers: Sequence[str] = (), obsm_layers: Sequence[str] = (), obsp_layers: Sequence[str] = (), varm_layers: Sequence[str] = (), varp_layers: Sequence[str] = (), drop_levels: bool = False) → AnnData

Executes the query and return result as an AnnData in-memory object.

Parameters:

  • X_name – The X layer to read and return in the X slot.

  • column_names – The columns in the var and obs dataframes to read.

  • X_layers – Additional X layers to read and return in the layers slot.

  • obsm_layers – Additional obsm layers to read and return in the obsm slot.

  • obsp_layers – Additional obsp layers to read and return in the obsp slot.

  • varm_layers – Additional varm layers to read and return in the varm slot.

  • varp_layers – Additional varp layers to read and return in the varp slot.

  • drop_levels – Indicate whether unused categories on axis frames should be dropped. By default, False, the categories which are present in the SOMA Experiment and not present in the query output are not dropped.

Lifecycle: maturing